Abstract
Introduction
Fatigue is the most commonly reported symptom in children and adolescents during and after treatment for cancer (Hooke & Linder, 2019; Portenoy, 2000). Fatigue is associated with decreased quality of life and may contribute to decreased physical function and impede normal childhood development (Hooke & Linder, 2019; Tanner et al., 2020). Currently, the only validated way to measure fatigue is through collection of self-reported data which may not be feasible for all children, specifically younger or sicker children, or those with lower reading levels. Proxy (i.e., parent) reports are often used as substitute measures but may not replace a child’s own report (Mack et al., 2020). In the precision medicine era, identifying biomarkers for fatigue would be beneficial in screening for and applying interventions to address this common symptom. A metabolomic approach to unraveling symptom experiences is promising as it allows for investigation of multiple metabolites and pathways at once and can provide insight into the physiological status of an individual at any one point in time (Li et al., 2016). Recent publications using omic approaches (microbiome and metabolomic) to explore associations with symptoms such as fatigue and other psychoneurological changes (i.e., anxiety, cognitive function, depression) during childhood cancer therapy offer evidence that the microbiome may influence fatigue through functional metabolomic pathways (i.e., tryptophan; Bai et al., 2022; Webster et al., 2024). These studies offer evidence that individual metabolites or metabolomic pathways may help in understanding and explaining symptoms of interest, such as fatigue.
Physical activity is often proposed as an intervention for managing fatigue during childhood cancer as it has been demonstrated that fatigue decreases with increased activity (Withycombe, McFatrich, et al., 2022). Although the biological mechanisms between physical activity and fatigue have been widely studied, recent work hypothesizes metabolites as one promising mechanism to interpret this relationship. One such study from our research group reported 27 metabolites (including tyrosine, tryptophan, valine, myoinositol, indole-3-latic acid) that significantly differentiated between low, medium, or high physical activity (Withycombe, Eldridge, et al., 2022) in children and adolescents on and off treatment for cancer. Other studies in this patient population have identified asparagine, dimethylglycine, and gamma-glutamylglutamine (Brown et al., 2021), as well as the tryptophan amino acid pathway associations with fatigue.
Physical activity is an umbrella term referring to any activities that lead to energy expenditure through skeletal muscle use (exercise, walking, bike riding, etc.; Caspersen et al., 1985). Moderate physical activity has proven to be an effective intervention for cancer-associated fatigue, yet children and adolescents with cancer often experience significant reductions in their physical activity throughout treatment (Winter et al., 2009). Conversely, physical function is a more nuanced term that focuses on performance and has less evidence of an inverse association with patient fatigue. Physical function can be measured through patient report or objectively using outcomes such as muscle strength, balance, mobility or flexibility. Upper extremity or lower extremity physical function can be measured separately, with lower extremity physical function often referred to as “mobility”.
Measuring self-reported physical activity in children with cancer has limitations as validated survey measures, such as the Patient-Reported Outcome Measurement Information System (PROMIS), asks questions about the intensity and frequency of activities. In children receiving cancer treatment, physical activity may be reduced due to the disease, the treatment, and inpatient hospitalizations in facilities that do not have physical environments conducive to supporting robust activities. For these reasons, physical function is often viewed as a more feasible outcome to measure in children receiving active cancer therapy. Self-reported physical function focuses less on the intensity of activities and more on activities related to everyday mobility. Although physical activity is inversely correlated with fatigue, the relationship between physical function and fatigue in children with cancer has been less explored. Therefore, the purpose of this study was to explore associations among fatigue, physical function, and targeted metabolites in children actively undergoing treatment for cancer.
Methods
Study Design and Setting
This study was an embedded sub-study within a larger parent project collecting child self-reports of symptoms during cancer therapy. Children enrolling in the parent survey study were invited to participate in this metabolomic sub-study with data collection occurring at the same time points. Additional information related to the methods of the parent study have been previously published (Reeve et al., 2020). In brief, children ages 7–18 years, receiving chemotherapy for a first cancer diagnosis, English speaking and cognitively able to self-report symptoms were eligible to participate. Children with central nervous system cancers (i.e., brain and spinal cord tumors) were excluded as treatment (i.e., surgery and/or cranial radiation) could potentially impact cognitive ability. This study was conducted at a large children’s hospital located in the Southeastern part of the United States. Parental consent and child assent were obtained in compliance with the IRB application reviewed and approved by Emory University.
Data Collection
Data collection occurred twice, with the first time point (T1) aligning with the beginning of a new cycle of chemotherapy occurring at least 1 month after treatment initiation. The T1 timepoint was selected to occur after the initial start of therapy to allow families time to comprehend their child’s diagnosis and make informed decisions regarding treatment. Most participants were enrolled early in therapy, however, eligibility allowed for inclusion of children anytime during active treatment (after the first month). The second data collection time point (T2) occurred 7–17 days after T1, to allow flexibility for clinic visits with differing treatment schedules and aligning with the parent study. T2 visits always occurred before the next chemotherapy cycle. Data collection occurred during regularly scheduled hospital visits. Research coordinators also collected demographic and clinical data from the medical records, including chemotherapy drugs and other administered medications (e.g., steroids) prior to each study timepoint.
Patient Reported Outcome (PRO) Assessments
Children electronically completed the PROMIS Pediatric survey questions at T1 and T2, capturing self-reports for the domains of anxiety, depression, fatigue, pain intensity/interference, physical function and sleep with a recall period of the “past 7 days”. PROMIS measures are well validated in children with cancer and are responsive to capturing change over time (DeWitt et al., 2011; Hinds et al., 2013).
The domains of fatigue and physical function were chosen for this analysis, a priori, to compare metabolite outcomes to our team’s prior research. Survey questions were captured electronically, using Computerized Adaptive Test methodology, with five to six questions per domain. Higher PROMIS fatigue scores reflect increased fatigue while higher physical function scores reflect better lower extremity function and mobility. PROMIS domain scores were developed using item response theory models and initially reported using a T-score metric (mean of 50; standard deviation of 10). A later study utilized a nationally representative sample of non-hospitalized children to produce estimated percentiles, per domain, for each PROMIS Pediatric measure which aide in the interpretation of scores (Carle et al., 2021). Based on these estimated percentiles from the national data, validated cut points for each individual PROMIS domain were established and used to classify fatigue and physical function for this study. The fatigue T-score cut point of 47.5 was used to classify “low fatigue” (T <47.5) and “high fatigue” (T
Specimen Collection
An extra 10 cc of blood was obtained, when routine clinical labs were being drawn, at T1 and T2 timepoints. Filled serum collection tubes were stored upright and transported (on cold packs) to the lab where they were processed immediately (goal of less than 30 minutes, but always <4 hours) by spinning at 1800 × 10 minutes at 4°C or room temperature. Serum was then removed, placed in 0.5 mL aliquot tubes, and stored in a −80° freezer.
Metabolite Analysis
The metabolomics extraction used established protocols for high-resolution liquid chromatography-mass spectrometry developed at the Clinical Biomarkers Laboratory at Emory University (Uppal et al., 2016). The platform allows for identification and ion intensity quantification of endogenous metabolites via their molecular mass, retention time through the chromatograph by matching to laboratory confirmed reference standards (Liu et al., 2020) and computational algorithms (Uppal et al., 2013) to online databases. The analytical pipeline has been previously utilized to explore metabolite associations with symptoms (Bai et al., 2022), clinical features (Eldridge et al., 2021), and prognosis (Eldridge et al., 2023) in cancer patients.
Briefly, each frozen serum sample was thawed and aliquoted to run as three replicates along with quality control pooled reference samples. The platform used dual chromatography separation: hydrophilic interaction liquid chromatography (HILIC) with positive electrospray ionization and 18-carbon (C18) with negative ionization; and standard solutions and settings for Fourier transform mass spectrometry (Dionex Ultimate 3000, Q-Exactive HF, Thermo Fisher). Peak extraction and ion intensity quantification were performed by validated methods and programs: apLCMS (Yu et al., 2013), XMSanalyzer (Uppal et al., 2013). The triplicate samples were averaged creating HILIC and C18 data tables with metabolite features with mass-to-charge ratio (m/z), retention time, and ion intensity for across the patient samples. Features missing in >20% of samples were removed, and remaining features were log2 transformed and z-score standardized. Features were matched by m/z and retention time to laboratory confirmed metabolite standards or to published metabolite databases, then the HILIC and C18 feature tables were merged.
Statistical Analysis
We provide descriptive statistics of our study population and the physical function and fatigue outcomes across the two timepoints. Additionally, we plotted the physical function and fatigue responses and performed Wilcoxon signed-rank paired samples tests and Spearman correlation analyses for the following outcome-timepoint comparisons: physical function at T1 versus physical function at T2; fatigue at T1 versus fatigue at T2; physical function at T1 versus fatigue at T1; and physical function at T2 versus fatigue at T2.
We restricted our metabolic analysis to an a priori list of 29 metabolites that we previously found associated with physical activity or fatigue in children with cancer in a study conducted by our group that used a different study population and metabolite extraction method (Withycombe, Eldridge, et al., 2022). The list of 29 metabolites corresponded to 86 analyzed m/z features, as the extraction and annotation frequently matched features to the same metabolite from both HILIC or C18 columns. Additionally, each metabolite might appear with different adducts (metabolite + H vs. metabolite + H [+1]), leading to multiple appearances of the same metabolite across columns or with varying adducts. We ran linear mixed effects models to account for the repeat measures, modeling the metabolite intensity (model outcome) against binary fatigue (low vs. high) or physical function (low vs. high) while adjusting for age and steroid use. We chose a p value cutoff of 0.05 since we had an a priori hypothesis about each metabolite. Additionally, we performed a sensitivity analysis to explore the residual confounding by gender and tumor site but found that neither were associated with fatigue or physical function at either timepoint and neither altered our model results. For metabolites found to be significantly associated with fatigue or physical function, we plotted stratified box plots to show the relative difference between the high and low categories. The statistical analysis was performed using R Studio Build 386.
Results
Participant Characteristics (n = 40).
Note. Abbreviations: SD = standard deviation, PROMIS = Patient Reported Outcome Measurement Information System.
Fatigue and Physical Function
Table 1 includes descriptives of the fatigue and physical function scores over time. Mean PROMIS Fatigue scores decreased from 45.1 at T1 to 43.7 at T2 indicating a trend of improved symptom burden over time yet were not statistically significant (Wilcoxon signed-rank test p = .22). Interestingly, though the overall mean values decreased from T1 to T2, we saw an increase in the percentage of children reporting values classified as high fatigue from 38% (n = 15) at T1 to 46% (n = 18) at T2.
At the same time, the mean PROMIS Pediatric Physical Function scores increased from 46.5 at T1 to 48.3 at T2 indicating improved physical function yet did not reach statistical significance (Wilcoxon signed-rank test p = .17). Approximately 26% (n = 10) of the T1 responses and 46% (n = 18) of the T2 responses were above the 51.5 cut point indicating normal physical function. There was a strong inverse, statistically significant correlation between physical function and fatigue at T1 (r = −0.64; p < .001) and T2 (r = −0.63; p < .001) (Figure 1). Paired relationships between physical function and fatigue are depicted at both T1 and T2 using PROMIS T scores (Supplemental File 1). Spearman’s rho Heatmap for Fatigue and Physical Function. Note: All values are significant at p < .001.
Metabolites Associated with Fatigue or Physical Function
Metabolites Significantly Associated With Fatigue or Physical Function.
Note. Mz = mass to charge ratio, rt (s) = retention time in seconds.
*From a repeated measures model of the outcome against the metabolite adjusting for age and steroid use.
**Level of metabolite confidence using the Metabolomics Standard Initiative (MSI) and Shymanski level of identification standards.

Box Plots of Metabolites Significantly Associated with Fatigue or Physical Function. Note: Figure 2 a-g. Box plots of log2-transformed, quantile normalized relative intensities of seven plasma metabolites that were significantly associated with either fatigue or physical function in their respective linear mixed effect model.
Gut Microbe Associations With Identified Metabolites.
Discussion
Metabolomic studies offer promising insight into the underlying biological changes linked with patient symptoms, which are crucial for developing and testing targeted interventions to address subjective symptoms such as fatigue. Work in this area may also potentially aide in identifying objective biomarkers for measuring symptoms in the future. This study offers new information on the metabolomic changes related to fatigue and physical function and associated metabolites. This study identified a statistically significant, inverse relationship between fatigue and physical function aligning with prior preliminary research showing that children with cancer having higher physical function often experience less fatigue (Hooke et al., 2011; Karimi et al., 2020). This finding underscores the potential that interventions aimed at improving physical functioning may also decrease fatigue in children on active therapy for cancer. Although this current study was not designed to determine causality, other studies have demonstrated the use of moderate physical activity interventions to decrease fatigue (Rock et al., 2012; Van Dijk-Lokkart et al., 2019). Our study expands this finding to show a significant inverse relationship also between physical function and fatigue. This finding holds clinical significance as interventions such as referrals to physical therapy during cancer treatment can assist with maintenance of physical function while, at the same time, possibly reducing fatigue. Chemotherapy agents commonly used in pediatric oncology are known to cause neurotoxic effects which may result in foot drop and other mobility impairments. Early referrals to combat these effects and maintain or improve physical function may also prove feasible and effective in supporting mobility and assist with fatigue management. Some childhood cancer centers have now integrated rehabilitation programs into their treatment plans to assist with promoting physical function during therapy (Tanner et al., 2022).
This study found a significant association between indole-3-lactic acid and fatigue, with higher levels of this metabolite correlating with lower self-reported fatigue. Indole-3-latic acid is a metabolite produced by the gut microbiota as a byproduct of tryptophan metabolism (Agus et al., 2018; Qian et al., 2024). Cancer chemotherapy can reduce the gut microbiome diversity and decrease the abundance of anti-inflammatory microbial taxa (e.g., Bifidobacterium), further inhibiting the synthesis or activities of Indole-3-latic acid. Its association with fatigue has yet to be fully elucidated, but preliminary evidence supports an association between inflammation, tryptophan breakdown and fatigue during cancer and cancer therapy (Lanser et al., 2020). Indole-3-lactic acid is well known for its anti-inflammatory properties, and current research is exploring its therapeutic potential for intestinal disorders (i.e., Crohn’s disease, necrotizing enterocolitis in preterm infants) (Meng et al., 2020) and multiple sclerosis (Levi et al., 2021).
This study also found several metabolites significantly associated with physical function: tryptophan, tyrosine, myo-inositol, m-coumaric acid, and 4-hydroxybenzoic acid. Tyrosine and tryptophan are amino acids precursors to neurotransmitters such as dopamine, serotonin, and norepinephrine which are associated with sleep and mood (Monti & Jantos, 2008; Xue et al., 2023). Myo-inositol is a metabolite synthesized from glucose and known for its role in improving insulin resistance (DiNicolantonio & James, 2022). M-Coumaric acid is an organic compound, obtained through diets containing caffeic acid, with demonstrated antioxidant properties (Sova & Saso, 2020). Lastly, 4-hydroxybenzoic acid is a phenolic acid obtained through diets containing berries, such as blackberries and raspberries (Bento-Silva et al., 2020) and is associated with preventing chronic health conditions (cardiovascular disease, diabetes) in animals fed diets rich in phenolic acid, though the evidence in humans is limited. Importantly, a common factor among these identified metabolites is their connection to the gut microbiome (Table 3). This is an important finding as evidence continues to emerge about the role of the gut microbiome in health and how it is altered during cancer therapy secondary to chemotherapy, radiation therapy, steroid use, antibiotic use and diet changes (Bhuta et al., 2019; Sahly et al., 2019). Prior publications have highlighted the possible use of prebiotics or probiotics as an intervention in this patient population to prevent or minimize gut dysbiosis (Bai et al., 2018). More recent studies have included physical exercise as a plausible intervention as physical activity can assist with enhancing gut microbiome diversity (Bielik et al., 2023). Less is known about the influence of physical function on the gut microbiome but a prior study, in older adults, found the following metabolites linked to gut bacterial metabolism associated with physical function: cinnamoylglycine, phenol sulfate, p-cresol sulfate, 3-indoxyl sulfate, serotonin, N-methylproline, hydrocinnamate, dimethylglycine, trans-urocanate, and valerate (Lustgarten et al., 2014). Our findings agree, supporting a connection with physical function and metabolites associated with the gut microbiome specifically those involving the tryptophan and tyrosine metabolic pathways.
This study reinforces findings from a prior metabolite study conducted by our research group using identical definitions of low versus high fatigue in children on and off treatment for cancer (Withycombe, Eldridge, et al., 2022). We also found metabolites associated with mobility in both studies although the prior study captured physical activity, and this current study measured physical function. The confirmation of similar metabolite findings is significant as the two studies contained distinctly different populations of patients and specimen samples (urine vs. serum). A comparison of our prior study and the current study is summarized to highlight the differences between the two studies (Supplemental File 3). Despite notable differences in the study designs, both studies found statistically significant results in metabolites associated with fatigue and mobility (measured as physical activity or physical function). Similar to our previous study, we identified statistically significant associations between fatigue and indole-3-lactic acid. Furthermore, in our prior study, we identified 27 metabolites that significantly differentiated between high and low physical activity in children (Withycombe, Eldridge, et al., 2022), and five of them (i.e., tyrosine, tryptophan, 4-hydroxybenzoic acid, m-coumaric acid and myoinositol) are the same as what we identified in the current study. The consistency of these findings underscores these metabolites as promising biomarkers for fatigue and/or mobility (physical activity or physical function) and provides guidance of biological pathways important for future confirmation in a larger cohort.
This study has several limitations, most notably a small sample size. Racial diversity was present, however, with 52% of the study sample being non-white. As with any study utilizing multiple data comparisons with a relatively small sample size, the risk of a Type 1 error may have been inflated. Physical function and fatigue scores were self-reported by children using Pediatric PROMIS measures. Self-reports may contain errors, although these measures have been well validated for use in children with cancer. Although an untargeted platform was used for metabolite identification, we focused the analysis on only 29 pre-determined metabolites of interest, which may in turn have limited new discoveries. Additionally, the study did not collect and/or control for diet or body composition which may have influenced the results. It is also important to clarify that the non-interventional design of our study and the temporal relationships examined do not establish causality between changes in metabolites, physical function, and fatigue. Future interventional studies are required to determine causality and explore the potential implications of these findings.
Implications for Nursing
Nurses are at the forefront of symptom science research and patient care and as such should advocate for assessment and management of symptoms during chronic illnesses such as cancer. As many symptoms are subjective in nature, having biomarkers validated as proxy measures for symptom presence and severity would be useful to guide interventions, and to access symptoms and treatment response. As physical activity and now physical function are both associated with decreased fatigue in children with cancer, nurses should assist with moving this evidence into practice through advocating for education related to mobility during cancer therapy including early referrals to physical therapy or other rehabilitation services.
Conclusion
This study contributes further evidence of metabolites associated with pediatric patient reported fatigue and physical function during cancer therapy. The identification of metabolomic biomarkers associated with subjective patient symptoms, such as fatigue, hold great clinical relevance for children who cannot self-report due to age, illness severity, or developmental delays. This study also highlights that improved physical function is associated with decreased fatigue, suggesting that future research aimed at enhancing mobility may alleviate symptoms of fatigue in pediatric cancer patients. Further research is needed to explore the relationship between metabolites like indole-3-lactic acid and fatigue to further our understanding between patient symptoms, physical function and gut produced metabolites.
Supplemental Material
Supplemental Material - Metabolomic Associations With Fatigue and Physical Function in Children With Cancer: A Pilot Study
Supplemental Material for Metabolomic Associations With Fatigue and Physical Function in Children With Cancer: A Pilot Study by Janice S. Withycombe, Jinbing Bai, Canhua Xiao and Ronald C. Eldridge in Biological Research For Nursing.
Footnotes
Author Note
Two facilities are equally affiliated with Dr. Withycombe’s work on this study. Data collection occurred while employed at Nell Hodgson Woodruff School of Nursing (Emory University), with statistical analysis and manuscript writing occurring while employed at Clemson University.
Acknowledgments
The authors would like to thank Rebecca M. Mitchell, PhD, for her initial contributions in planning this study and the children that shared their symptom experience with us during their treatment for cancer. Drs. Withycombe, Xiao and Bai would like to acknowledge participation as Fellows in the Transdisciplinary Research in Energetics and Cancer (TREC) National Cancer Institute Training Workshop which helped to inform this work (Grant #R25CA203650; PI: Irwin).
Author Contributions
W.J. contributed to conception and design contributed to acquisition, analysis, and interpretation drafted manuscript critically revised manuscript gave final approval agrees to be accountable for all aspects of work ensuring integrity and accuracy B.J. contributed to conception contributed to acquisition and interpretation drafted manuscript critically revised manuscript gave final approval agrees to be accountable for all aspects of work ensuring integrity and accuracy X.C. contributed to design contributed to interpretation drafted manuscript critically revised manuscript gave final approval agrees to be accountable for all aspects of work ensuring integrity and accuracy E.R. contributed to design contributed to analysis and interpretation drafted manuscript critically revised manuscript gave final approval agrees to be accountable for all aspects of work ensuring integrity and accuracy.
Declaration of Conflicting Interests
The author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
Funding
The author(s) disclosed receipt of the following financial support for the research, authorship, and/or publication of this article: This work was supported through an American Cancer Society Institutional Research Grant through Winship Cancer Center [grant number IRG-17–181-04] and through the National Cancer Institute (R01CA175759) and the National Institute of Arthritis and Musculoskeletal and Skin Diseases (U19AR069522) for work pertaining to the Pediatric PROMIS measures.
Data Availability Statement
Requests regarding data availability may be submitted to the corresponding author. Public sharing of data is restricted under an existing material transfer agreement.
Supplemental Material
Supplemental material for this article is available online.
References
Supplementary Material
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